• Skip to primary navigation
  • Skip to main content
  • Skip to primary sidebar

Pudge Factor

A food blog with everyday recipes, step-by-step directions and photos, and detailed recipes.

  • Recipe Index
  • Halloween Treats
  • Game Day
  • Casseroles
  • Pasta
  • Just Recipes
  • Subscribe
menu icon
go to homepage
  • Recipe Index
  • Halloween Treats
  • Game Day
  • Casseroles
  • Pasta
  • Just Recipes
  • Subscribe
    • Facebook
    • Instagram
    • Pinterest
    • TikTok
    • YouTube
  • subscribe
    search icon
    Homepage link
    • Recipe Index
    • Halloween Treats
    • Game Day
    • Casseroles
    • Pasta
    • Just Recipes
    • Subscribe
    • Facebook
    • Instagram
    • Pinterest
    • TikTok
    • YouTube
  • ×
    Home » Recipes » Pasta

    Make Ahead Muffin Tin Macaroni and Cheese Cups

    By Chula King · Nov 7, 2016 · Updated: Aug 27, 2024

    Jump to Recipe
    Make ahead muffin tin macaroni and cheese cups.

    My favorite parts of mac n cheese are the cheesy top of the mac and the crusty edges. What if you could achieve that in a hand-held macaroni and cheese bite that's baked to perfection in a muffin tin? You can with these delicious Make-Ahead Muffin Tin Macaroni and Cheese Cups. They are easy to make, taste incredible whether served hot or at room temperature, can be refrigerated and reheated, and freeze beautifully. Who could ask for more?

    Mac and cheese cups.

    Why You'll Love This Recipe

    Mac and cheese is the ultimate comfort food. Reasons that you'll love this recipe include the following:

    • It's convenient. You can assemble the macaroni and cheese in the muffin tin beforehand, then bake them off when you're ready to eat.
    • It's versatile. Muffin tin mac and cheese can be served as a main course, side dish, or appetizer.
    • It's portable. You can easily pack up the mac and cheese muffins in a travel carrier and take them with you to potlucks and parties.
    • It's tasty. Muffin-tin mac and cheese is just as delicious as traditional mac and cheese, but it's even more convenient to enjoy.

    Ingredients: Here's What You'll Need 

    Ingredients for muffin tin Mac and cheese.

    I used the following basic ingredients in this recipe.

    • The Macaroni: I used dried elbow macaroni.
    • The Cheeses: I used two kinds of shredded cheese in this make-ahead creamy mac and cheese - sharp cheddar cheese and Fontina cheese. I also used cream cheese for added richness but could have substituted sour cream for the cream cheese.
    • The Binder: Rather than use a traditional cheese sauce to bind the cooked pasta, I used a large egg.
    • The Seasonings: The seasonings were simple - Kosher salt, freshly grated black pepper, and dry mustard.
    • The Fats: I included some unsalted butter and olive oil.

    Steps: Here's How I Made These Mac n Cheese Muffins

    1. I started by cooking the macaroni according to package directions for 7 minutes in a large pot of salted water that had come to a boil over medium-high heat.
    Adding elbow macaroni to boiling water.
    1. After 7 minutes, I drained the cooked macaroni noodles in a colander and transferred the pasta to a large bowl. I added the butter and cream cheese to the hot macaroni and stirred the mixture to melt the butter and cream cheese and coat the macaroni (Photo 1).
    1. Then, I added the milk and egg and continued stirring to incorporate the milk and egg into the mixture evenly (Photo 2).
    1. After that, I added the dry mustard, salt, freshly ground black pepper, and the cheddar and Fontina cheeses. I stirred the mixture to ensure everything was well mixed (Photos 3 and 4).
    Making the mac and cheese mixture.
    1. I used cooking spray to coat each muffin tin cup. Then, I added the macaroni mixture to my prepared muffin pan using a large ice cream scoop.
    Adding mac and cheese to muffin pan.
    1. I topped the macaroni mixture with reserved cheddar cheese, Fontina cheese, and Panko bread crumbs, mixed with a tablespoon of olive oil. I could have used a tablespoon of vegetable oil or melted butter in place of the olive oil.
    Adding Panko Bread Crumbs.

    I baked the Make Ahead Muffin Tin Macaroni and Cheese Cups in a preheated 350°F oven for 35 minutes, until the tops were bubbly and golden brown and the macaroni was well set.

    Mac and cheese cups out of the oven.

    I let the macaroni cool for 10 minutes before transferring the bites from the muffin tin to a wire rack.

    Mac and cheese cups cooling on a wire rack.

    I ended up with a dozen incredibly versatile Make-Ahead Muffin Tin Macaroni and Cheese Cups. They're equally delicious, whether hot or cold. In addition, they can be easily refrigerated and reheated.

    Best of all, they freeze beautifully, which is the Make-Ahead part and are readily available for your anytime feast. Yum!

    Make-ahead macaroni and cheese bites.

    Frequently Asked Questions

    Can I substitute different cheeses in this recipe?

    Feel free to experiment with different cheeses in this recipe. For example, you could substitute mozzarella cheese or goat cheese for the Fontina cheese. You could also add some grated parmesan cheese to the panko bread crumbs for the topping.

    How do I make these macaroni and cheese cups ahead of time?

    Assemble the cups according to the recipe, cover them tightly with plastic wrap or foil, and refrigerate for up to 24 hours. When you're ready to bake, preheat the oven to 350°F and bake the cups for 20-25 minutes or until heated through and bubbly.

    Can the macaroni and cheese cups be frozen?

    You can freeze macaroni and cheese cups. Assemble the cups according to the recipe, then cover them tightly with plastic wrap or foil and freeze for up to 3 months. When you're ready to bake, thaw the cups in the refrigerator overnight, then bake them according to the recipe.

    What is the best way to store leftover macaroni and cheese cups?

    Leftover macaroni and cheese cups can be stored in an airtight container in the refrigerator for up to 3 days. To reheat, microwave them on high for 1-2 minutes or until heated. You can also reheat them in the oven at 350°F for 10-15 minutes or until heated through and bubbly.

    Why not make the homemade Mac n cheese with a traditional all-purpose flour cheese sauce?

    A key to this recipe is ensuring that the Mac n cheese cups stay together after they have been baked. That's why the addition of the egg is important. If a traditional cheese sauce is used, the cooked pasta might not stay together as well.

    Recipe Tips and Tricks

    • Use good quality cheese. The cheese is the star of the show in macaroni and cheese, so it's important to use a good quality cheese.
    • Don't overcook the pasta. The pasta should be cooked al dente or slightly firm to the bite. This will help to prevent the pasta from becoming mushy in the oven.
    • Use a muffin tin that has been well-coated with a non-stick cooking spray. This will help to prevent the macaroni and cheese cups from sticking to the pan.
    • In addition to using Panko bread crumbs, you can top the macaroni and cheese cups with regular bread crumbs or crushed Ritz crackers mixed with some shredded Parmesan cheese. This will give the cups a nie golden brown crust.

    For a mini mac but equally delicious recipe, you should try my Wonton Mac & Cheese Bites. Or if you're looking for more Mac & Cheese goodness, check out my Ultimate Make Ahead Macaroni and Cheese. For an easy mac recipe check out Susan's Easy Stovetop Mac & Cheese.

    I hope you liked this recipe for Make-Ahead Muffin Tin Mac & Cheese as much as I do. If so, please consider rating it and leaving a comment. Also, if you'd like to receive notifications of new posts by email, enter your email address in the Subscribe box.

    Thank you so much for visiting Pudge Factor. I hope you'll come back!

    Recipe

    Want to Save This Recipe?

    Enter your email & I'll send it to your inbox. Plus, enjoy weekly doses of culinary inspiration as a bonus!

    Save Post

    By submitting this form, you consent to receive emails from Pudge Factor.

    A decadent combination of three cheeses that's sure to not only please your most picky eater, but also WOW your Thanksgiving guests.

    Make-Ahead Muffin Tin Mac & Cheese

    Make-Ahead Muffin Tin Mac & Cheese Cups are easy to make, taste incredible whether hot or cold, can be refrigerated and reheated, and best of all, freeze beautifully. Who could ask for more?
    4.47 from 49 votes
    Prevent your screen from going dark
    Print Recipe Pin Recipe
    Prep Time 10 minutes mins
    Cook Time 45 minutes mins
    Resting Time 10 minutes mins
    Total Time 55 minutes mins
    Course Appetizer, Side Dish
    Cuisine American
    Servings 12 Make-Ahead Muffin Tin Mac & Cheese
    Calories 291 kcal

    Ingredients

    • 2 cups (8 ounces) uncooked elbow macaroni
    • 1 Tablespoon unsalted butter room temperature
    • 3 ounces cream cheese room temperature
    • 1 cup (8 ounces) milk
    • 1 large egg
    • 1 teaspoon dry mustard
    • 2 cups (8 ounces) shredded Cheddar cheese, divided
    • 2 cups (8 ounces) shredded Fontina cheese, divided
    • Salt
    • Freshly ground black pepper
    • ¼ cup Panko bread crumbs
    • 1 Tablespoon olive oil

    Instructions
     

    • Preheat oven to 350°F. Spray the cups of a regular muffin pan with nonstick spray. Set aside.
    • Cook macaroni in salted boiling water for 7 minutes. Drain in a colander. Transfer to a large bowl.
    • Add butter and cream cheese to the hot macaroni. Stir to melt the butter and cream cheese and evenly coat the macaroni.
    • Add milk and egg; stir to evenly coat the macaroni.
    • Add dry mustard, ¼ to ½ teaspoon of salt, and ⅛ teaspoon freshly ground black pepper; stir to combine.
    • Add 1 ½ cups of cheddar cheese and 1 ½ cups of Fontina cheese; stir to combine.
    • Spoon the macaroni mixture into the prepared muffin pan. Top with reserved cheddar cheese and Fontina cheese.
    • Mix Panko bread crumbs with 1 tablespoon of olive oil. Sprinkle 1 teaspoon of Panko bread crumb mixture on top of each macaroni cup.
    • Bake in a preheated 350°F oven for 30 to 35 minutes, or until tops are golden brown and bubbly, and the macaroni is set.
    • Remove from oven; cool 10 minutes before removing from pan to wire rack to continue cooling.
    • May be served hot or cold, refrigerated and reheated, or frozen and reheated.
    • Yield: 12 Make Ahead Muffin Tin Mac & Cheese.

    Nutrition

    Calories: 291kcalCarbohydrates: 15gProtein: 14gFat: 18gSaturated Fat: 10gCholesterol: 71mgSodium: 340mgPotassium: 113mgSugar: 2gVitamin A: 565IUCalcium: 295mgIron: 0.6mg
    Keyword Mac and Cheese Bites, Mac and Cheese Cups, Mac and Cheese Muffins
    Tried this recipe? Tag me today!Mention @PudgeFactor or tag #pudgefactor

    More Pasta

    • Creamy One-Pot Tuscan Italian Sausage Pasta
    • Pastrami and Irish Cheddar Mac & Cheese
      Pastrami and Irish Cheddar Mac & Cheese
    • Cajun Three-Cheese Crawfish & Andouille Macaroni
      Cajun Three-Cheese Crawfish & Andouille Macaroni
    • Pasta al Limone (Lemon Pasta)
      Pasta al Limone (Lemon Pasta)

    Reader Interactions

    Comments

    1. Mary S says

      March 24, 2024 at 7:47 pm

      5 stars
      I made this recipe for Christmas Eve and everyone loved it. I made it in a mini muffin pan using the same baking time. I made a triple recipe and ran out of time to cook them all, so put the leftovers in a ziplock bag in the fridge. The next day we put the leftover mac and cheese mixture in a casserole and baked it. It was just as delicious and will be my go to baked mac and cheese recipe. Easier than making a roux and melting cheese on the stove. I really think the fontina cheese made a big difference in taste. Delicious!

      Reply
      • Chula King says

        March 24, 2024 at 8:15 pm

        Excellent! So glad the recipe worked out for you, and I love that you used the mini muffin pan!

        Chula

        Reply
    2. mich says

      September 26, 2023 at 12:53 pm

      Can I fill the mjuffin tins then refridgerate and bake them a few days later??

      Reply
      • Chula King says

        September 26, 2023 at 7:20 pm

        Mich,

        I've not filled the muffin tins ahead of time, but think that this would work well.

        Chula

        Reply
        • Jody Schroeder says

          February 23, 2025 at 10:03 am

          I’m confused by this comment. Above you state to fill the tin and the “bake when ready”. Isn’t that what she’s asking?

    3. Shelly Kan-Hai says

      July 09, 2023 at 3:02 am

      Does the shredded cheeses have so be shredded from blocks or is prepackaged shredded cheese ok?

      Reply
      • Chula King says

        July 09, 2023 at 8:51 am

        Prepackaged shredded cheese is fine in this recipe.

        Chula

        Reply
    4. Charlene says

      May 05, 2023 at 5:06 am

      How long do they last in the fridge?

      Reply
      • Chula King says

        May 05, 2023 at 4:39 pm

        If stored in an airtight container, they should last for several days.

        Reply
    5. Courtney says

      November 20, 2022 at 6:11 pm

      If you make recipe ahead of of time and freeze them until you are ready to bake them, what temperature and how long f0r?

      Reply
      • Chula King says

        November 23, 2022 at 9:17 am

        Courtney,

        They need to be baked first and then either refrigerated or frozen. If frozen, I usually reheat them at 350°F for around 10 minutes.

        Reply
    6. Cathy says

      July 02, 2020 at 4:56 pm

      I need to make a double batch. Should I just double the recipe or make two separate batches?

      Reply
      • Chula King says

        July 03, 2020 at 8:52 am

        Cathy,

        You could do either two single batches or a double batch. The only potential issue with a double batch is having a bowl or pan large enough to hold and mix the ingredients.

        Chula

        Reply
    7. Kiana says

      June 25, 2020 at 8:25 pm

      How do you freeze them? Can they all be tossed in a plastic bag or are they too sticky and best to be frozen in a single layer first?

      Reply
      • Chula King says

        June 26, 2020 at 8:27 am

        Kiana,

        I freeze them first in a single layer and then place them frozen in a Ziploc bag.

        Chula

        Reply
    8. Holly says

      December 06, 2019 at 11:18 am

      At the top is says bake 45 minutes, but in body of directions it says 35. Which is it?? Thanks!

      Reply
      • PudgeFactor says

        December 06, 2019 at 10:12 pm

        Holly, you should bake them for 35 minutes!

        Reply
    9. Sheri Blais says

      December 01, 2019 at 1:59 pm

      How do you reheat them if they are just refrigerated, not frozen?

      Reply
      • PudgeFactor says

        December 01, 2019 at 8:50 pm

        Sheri, If they are just refrigerated, I reheat them basically the same way but for less time. Specifically, I reheat them at 350°F for about 10 minutes.

        Chula

        Reply
    10. Shelly Smith says

      October 07, 2019 at 12:36 pm

      *Do. Sorry for the typo.

      Reply
    11. Shelly Smith says

      October 07, 2019 at 12:36 pm

      So you reheat them directly from a frozen state or do you thaw them first?

      Reply
      • PudgeFactor says

        October 07, 2019 at 2:14 pm

        Shelly, I reheat them from a frozen state.

        Chula

        Reply
        • sandy says

          December 02, 2024 at 4:50 pm

          can I eliminate the egg we have a food allergy

        • Chula King says

          December 03, 2024 at 6:23 pm

          Sandy,

          The egg helps to bind the other ingredients together. I've not made these without adding the egg, so unfortunately can offer a substitution.

          I'm sorry.

          Chula

    12. Holly says

      September 20, 2019 at 9:25 am

      Thank you! Have a vegetarian over for the holidays and having.an appetizer party...these will be perfect and I can do ahead!

      Reply
      • PudgeFactor says

        September 20, 2019 at 11:53 am

        Holly, I've also made them in a mini-muffin pan for more of a bite-sized appetizer. With the mini-muffin pan, I reduce the time in the oven to 20 to 25 minutes. They still freeze and reheat beautifully!

        Chula

        Reply
    13. Holly says

      September 19, 2019 at 1:44 pm

      When reheating do you put them back into the muffin tins, or just on a cookie sheet?

      Reply
      • PudgeFactor says

        September 19, 2019 at 3:28 pm

        Holly, I just put them on a cookie sheet.

        Chula

        Reply
    14. Arjay says

      November 10, 2018 at 6:04 pm

      Could you give details abt reheating from frozen? Do they hold their crispiness? Good sounding revipe....

      Reply
      • PudgeFactor says

        November 11, 2018 at 2:13 pm

        I reheat the frozen Muffin-Tin Mac & Cheese for 10 to 15 minutes in a 350° F oven. They do retain their crispiness. Hope this helps.

        Reply
    15. GI GI says

      October 26, 2018 at 4:45 pm

      On the 2 cups (8 ounces) uncooked elbow macaroni I'm confused, do you mean 1 cup (8 ounces) uncooked elbow macaroni?

      Reply
      • PudgeFactor says

        October 26, 2018 at 4:59 pm

        Sorry for the confusion. It doesn’t help that ounces are used for both volume and weight. One cup of uncooked elbow macaroni by volume, i.e., measured in a measuring cup, weighs approximately 4 ounces. Therefore 2 cups of uncooked elbow macaroni by volume weighs 8 ounces. Hope this helps!

        Chula

        Reply
    4.47 from 49 votes (48 ratings without comment)

    Leave a Reply Cancel reply

    Your email address will not be published. Required fields are marked *

    Recipe Rating




    Primary Sidebar

    Chula and Susan

    Welcome to PudgeFactor®.

    It’s great to have you here. We are Chula and Susan, a mother-and-daughter duo who love to cook and share our culinary creations with you.

    More about us →

    • YouTube
    • Instagram
    • Pinterest
    • Mail

    Beat the Heat with Frozen Treats

    • Mini ichocolate-dipped ce cream bars.
      Mini Chocolate-Dipped Ice Cream Bars
    • Chocolate cottage cheese fudgesicles.
      Creamy Chocolate Cottage Cheese Fudgesicles
    • Copycat Tropical Smoothie Hawaiian Breeze
      Copycat Tropical Smoothie Hawaiian Breeze
    • Nutella cottage cheese gelato.
      Viral TikTok Chocolate Nutella Cottage Cheese Gelato
    • Copycat Classic Orange Julius
    • Disney-Inspired Dole Whip.
      Easy Disney-Inspired Dole Whip
    • Homemade fresh peach ice cream.
      Homemade No-Egg Fresh Peach Ice Cream
    • Homemade Frozen Fresh Strawberry Yogurt

    See more Frozen Treat Recipes→

    Sites Featured In

    Popular Recipes

    • Easy Peasy British Sausage Rolls
      Easy Peasy British Sausage Rolls
    • Chicken Schnitzel with Mustard Cream Sauce
      Chicken Schnitzel with Mustard Cream Sauce
    • Homemade Waffle Cones
      Homemade Waffle Cones
    • Tate's Bake Shop Chocolate Chip Cookies
      Tate's Bake Shop Chocolate Chip Cookies

    See more Recipes→

    Footer

    © 2012–2025 · Pudge Factor®, LLC · Privacy Policy · Disclaimer

    Rate This Recipe

    Your vote:




    A rating is required
    A name is required
    An email is required

    Recipe Ratings without Comment

    Something went wrong. Please try again.